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authorDeterminant <[email protected]>2016-02-29 20:06:25 +0800
committerDeterminant <[email protected]>2016-02-29 20:06:25 +0800
commit534b039d297b9f2f83f889e2592686d79569e141 (patch)
tree66f73999d98427d2e4c2ed09eeec3d6d845fb975 /kaldi_decode
parent1e0ac0fb5c9f517e7325deb16004de1054454da7 (diff)
...
Diffstat (limited to 'kaldi_decode')
-rwxr-xr-xkaldi_decode/utils/int2sym.pl71
-rwxr-xr-xkaldi_decode/utils/parse_options.sh97
-rwxr-xr-xkaldi_decode/utils/queue.pl580
-rwxr-xr-xkaldi_decode/utils/run.pl264
-rwxr-xr-xkaldi_decode/utils/split_data.sh135
5 files changed, 0 insertions, 1147 deletions
diff --git a/kaldi_decode/utils/int2sym.pl b/kaldi_decode/utils/int2sym.pl
deleted file mode 100755
index d618939..0000000
--- a/kaldi_decode/utils/int2sym.pl
+++ /dev/null
@@ -1,71 +0,0 @@
-#!/usr/bin/env perl
-# Copyright 2010-2012 Microsoft Corporation Johns Hopkins University (Author: Daniel Povey)
-# Apache 2.0.
-
-undef $field_begin;
-undef $field_end;
-
-
-if ($ARGV[0] eq "-f") {
- shift @ARGV;
- $field_spec = shift @ARGV;
- if ($field_spec =~ m/^\d+$/) {
- $field_begin = $field_spec - 1; $field_end = $field_spec - 1;
- }
- if ($field_spec =~ m/^(\d*)[-:](\d*)/) { # accept e.g. 1:10 as a courtesty (properly, 1-10)
- if ($1 ne "") {
- $field_begin = $1 - 1; # Change to zero-based indexing.
- }
- if ($2 ne "") {
- $field_end = $2 - 1; # Change to zero-based indexing.
- }
- }
- if (!defined $field_begin && !defined $field_end) {
- die "Bad argument to -f option: $field_spec";
- }
-}
-$symtab = shift @ARGV;
-if(!defined $symtab) {
- print STDERR "Usage: sym2int.pl [options] symtab [input] > output\n" .
- "options: [-f (<field>|<field_start>-<field-end>)]\n" .
- "e.g.: -f 2, or -f 3-4\n";
- exit(1);
-}
-
-open(F, "<$symtab") || die "Error opening symbol table file $symtab";
-while(<F>) {
- @A = split(" ", $_);
- @A == 2 || die "bad line in symbol table file: $_";
- $int2sym{$A[1]} = $A[0];
-}
-
-sub int2sym {
- my $a = shift @_;
- my $pos = shift @_;
- if($a !~ m:^\d+$:) { # not all digits..
- $pos1 = $pos+1; # make it one-based.
- die "int2sym.pl: found noninteger token $a [in position $pos1]\n";
- }
- $s = $int2sym{$a};
- if(!defined ($s)) {
- die "int2sym.pl: integer $a not in symbol table $symtab.";
- }
- return $s;
-}
-
-$error = 0;
-while (<>) {
- @A = split(" ", $_);
- for ($pos = 0; $pos <= $#A; $pos++) {
- $a = $A[$pos];
- if ( (!defined $field_begin || $pos >= $field_begin)
- && (!defined $field_end || $pos <= $field_end)) {
- $a = int2sym($a, $pos);
- }
- print $a . " ";
- }
- print "\n";
-}
-
-
-
diff --git a/kaldi_decode/utils/parse_options.sh b/kaldi_decode/utils/parse_options.sh
deleted file mode 100755
index fdc8a36..0000000
--- a/kaldi_decode/utils/parse_options.sh
+++ /dev/null
@@ -1,97 +0,0 @@
-#!/bin/bash
-
-# Copyright 2012 Johns Hopkins University (Author: Daniel Povey);
-# Arnab Ghoshal, Karel Vesely
-
-# Licensed under the Apache License, Version 2.0 (the "License");
-# you may not use this file except in compliance with the License.
-# You may obtain a copy of the License at
-#
-# http://www.apache.org/licenses/LICENSE-2.0
-#
-# THIS CODE IS PROVIDED *AS IS* BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
-# KIND, EITHER EXPRESS OR IMPLIED, INCLUDING WITHOUT LIMITATION ANY IMPLIED
-# WARRANTIES OR CONDITIONS OF TITLE, FITNESS FOR A PARTICULAR PURPOSE,
-# MERCHANTABLITY OR NON-INFRINGEMENT.
-# See the Apache 2 License for the specific language governing permissions and
-# limitations under the License.
-
-
-# Parse command-line options.
-# To be sourced by another script (as in ". parse_options.sh").
-# Option format is: --option-name arg
-# and shell variable "option_name" gets set to value "arg."
-# The exception is --help, which takes no arguments, but prints the
-# $help_message variable (if defined).
-
-
-###
-### The --config file options have lower priority to command line
-### options, so we need to import them first...
-###
-
-# Now import all the configs specified by command-line, in left-to-right order
-for ((argpos=1; argpos<$#; argpos++)); do
- if [ "${!argpos}" == "--config" ]; then
- argpos_plus1=$((argpos+1))
- config=${!argpos_plus1}
- [ ! -r $config ] && echo "$0: missing config '$config'" && exit 1
- . $config # source the config file.
- fi
-done
-
-
-###
-### No we process the command line options
-###
-while true; do
- [ -z "${1:-}" ] && break; # break if there are no arguments
- case "$1" in
- # If the enclosing script is called with --help option, print the help
- # message and exit. Scripts should put help messages in $help_message
- --help|-h) if [ -z "$help_message" ]; then echo "No help found." 1>&2;
- else printf "$help_message\n" 1>&2 ; fi;
- exit 0 ;;
- --*=*) echo "$0: options to scripts must be of the form --name value, got '$1'"
- exit 1 ;;
- # If the first command-line argument begins with "--" (e.g. --foo-bar),
- # then work out the variable name as $name, which will equal "foo_bar".
- --*) name=`echo "$1" | sed s/^--// | sed s/-/_/g`;
- # Next we test whether the variable in question is undefned-- if so it's
- # an invalid option and we die. Note: $0 evaluates to the name of the
- # enclosing script.
- # The test [ -z ${foo_bar+xxx} ] will return true if the variable foo_bar
- # is undefined. We then have to wrap this test inside "eval" because
- # foo_bar is itself inside a variable ($name).
- eval '[ -z "${'$name'+xxx}" ]' && echo "$0: invalid option $1" 1>&2 && exit 1;
-
- oldval="`eval echo \\$$name`";
- # Work out whether we seem to be expecting a Boolean argument.
- if [ "$oldval" == "true" ] || [ "$oldval" == "false" ]; then
- was_bool=true;
- else
- was_bool=false;
- fi
-
- # Set the variable to the right value-- the escaped quotes make it work if
- # the option had spaces, like --cmd "queue.pl -sync y"
- eval $name=\"$2\";
-
- # Check that Boolean-valued arguments are really Boolean.
- if $was_bool && [[ "$2" != "true" && "$2" != "false" ]]; then
- echo "$0: expected \"true\" or \"false\": $1 $2" 1>&2
- exit 1;
- fi
- shift 2;
- ;;
- *) break;
- esac
-done
-
-
-# Check for an empty argument to the --cmd option, which can easily occur as a
-# result of scripting errors.
-[ ! -z "${cmd+xxx}" ] && [ -z "$cmd" ] && echo "$0: empty argument to --cmd option" 1>&2 && exit 1;
-
-
-true; # so this script returns exit code 0.
diff --git a/kaldi_decode/utils/queue.pl b/kaldi_decode/utils/queue.pl
deleted file mode 100755
index 1e36de6..0000000
--- a/kaldi_decode/utils/queue.pl
+++ /dev/null
@@ -1,580 +0,0 @@
-#!/usr/bin/env perl
-use strict;
-use warnings;
-
-# Copyright 2012 Johns Hopkins University (Author: Daniel Povey).
-# 2014 Vimal Manohar (Johns Hopkins University)
-# Apache 2.0.
-
-use File::Basename;
-use Cwd;
-use Getopt::Long;
-
-# queue.pl has the same functionality as run.pl, except that
-# it runs the job in question on the queue (Sun GridEngine).
-# This version of queue.pl uses the task array functionality
-# of the grid engine. Note: it's different from the queue.pl
-# in the s4 and earlier scripts.
-
-# The script now supports configuring the queue system using a config file
-# (default in conf/queue.conf; but can be passed specified with --config option)
-# and a set of command line options.
-# The current script handles:
-# 1) Normal configuration arguments
-# For e.g. a command line option of "--gpu 1" could be converted into the option
-# "-q g.q -l gpu=1" to qsub. How the CLI option is handled is determined by a
-# line in the config file like
-# gpu=* -q g.q -l gpu=$0
-# $0 here in the line is replaced with the argument read from the CLI and the
-# resulting string is passed to qsub.
-# 2) Special arguments to options such as
-# gpu=0
-# If --gpu 0 is given in the command line, then no special "-q" is given.
-# 3) Default argument
-# default gpu=0
-# If --gpu option is not passed in the command line, then the script behaves as
-# if --gpu 0 was passed since 0 is specified as the default argument for that
-# option
-# 4) Arbitrary options and arguments.
-# Any command line option starting with '--' and its argument would be handled
-# as long as its defined in the config file.
-# 5) Default behavior
-# If the config file that is passed using is not readable, then the script
-# behaves as if the queue has the following config file:
-# $ cat conf/queue.conf
-# # Default configuration
-# command qsub -v PATH -cwd -S /bin/bash -j y -l arch=*64*
-# option mem=* -l mem_free=$0,ram_free=$0
-# option mem=0 # Do not add anything to qsub_opts
-# option num_threads=* -pe smp $0
-# option num_threads=1 # Do not add anything to qsub_opts
-# option max_jobs_run=* -tc $0
-# default gpu=0
-# option gpu=0 -q all.q
-# option gpu=* -l gpu=$0 -q g.q
-
-my $qsub_opts = "";
-my $sync = 0;
-my $num_threads = 1;
-my $gpu = 0;
-
-my $config = "conf/queue.conf";
-
-my %cli_options = ();
-
-my $jobname;
-my $jobstart;
-my $jobend;
-
-my $array_job = 0;
-
-sub print_usage() {
- print STDERR
- "Usage: queue.pl [options] [JOB=1:n] log-file command-line arguments...\n" .
- "e.g.: queue.pl foo.log echo baz\n" .
- " (which will echo \"baz\", with stdout and stderr directed to foo.log)\n" .
- "or: queue.pl -q all.q\@xyz foo.log echo bar \| sed s/bar/baz/ \n" .
- " (which is an example of using a pipe; you can provide other escaped bash constructs)\n" .
- "or: queue.pl -q all.q\@qyz JOB=1:10 foo.JOB.log echo JOB \n" .
- " (which illustrates the mechanism to submit parallel jobs; note, you can use \n" .
- " another string other than JOB)\n" .
- "Note: if you pass the \"-sync y\" option to qsub, this script will take note\n" .
- "and change its behavior. Otherwise it uses qstat to work out when the job finished\n" .
- "Options:\n" .
- " --config <config-file> (default: $config)\n" .
- " --mem <mem-requirement> (e.g. --mem 2G, --mem 500M, \n" .
- " also support K and numbers mean bytes)\n" .
- " --num-threads <num-threads> (default: $num_threads)\n" .
- " --max-jobs-run <num-jobs>\n" .
- " --gpu <0|1> (default: $gpu)\n";
- exit 1;
-}
-
-if (@ARGV < 2) {
- print_usage();
-}
-
-for (my $x = 1; $x <= 3; $x++) { # This for-loop is to
- # allow the JOB=1:n option to be interleaved with the
- # options to qsub.
- while (@ARGV >= 2 && $ARGV[0] =~ m:^-:) {
- my $switch = shift @ARGV;
-
- if ($switch eq "-V") {
- $qsub_opts .= "-V ";
- } else {
- my $argument = shift @ARGV;
- if ($argument =~ m/^--/) {
- print STDERR "WARNING: suspicious argument '$argument' to $switch; starts with '-'\n";
- }
- if ($switch eq "-sync" && $argument =~ m/^[yY]/) {
- $sync = 1;
- $qsub_opts .= "$switch $argument ";
- } elsif ($switch eq "-pe") { # e.g. -pe smp 5
- my $argument2 = shift @ARGV;
- $qsub_opts .= "$switch $argument $argument2 ";
- $num_threads = $argument2;
- } elsif ($switch =~ m/^--/) { # Config options
- # Convert CLI option to variable name
- # by removing '--' from the switch and replacing any
- # '-' with a '_'
- $switch =~ s/^--//;
- $switch =~ s/-/_/g;
- $cli_options{$switch} = $argument;
- } else { # Other qsub options - passed as is
- $qsub_opts .= "$switch $argument ";
- }
- }
- }
- if ($ARGV[0] =~ m/^([\w_][\w\d_]*)+=(\d+):(\d+)$/) { # e.g. JOB=1:20
- $array_job = 1;
- $jobname = $1;
- $jobstart = $2;
- $jobend = $3;
- shift;
- if ($jobstart > $jobend) {
- die "queue.pl: invalid job range $ARGV[0]";
- }
- if ($jobstart <= 0) {
- die "run.pl: invalid job range $ARGV[0], start must be strictly positive (this is a GridEngine limitation).";
- }
- } elsif ($ARGV[0] =~ m/^([\w_][\w\d_]*)+=(\d+)$/) { # e.g. JOB=1.
- $array_job = 1;
- $jobname = $1;
- $jobstart = $2;
- $jobend = $2;
- shift;
- } elsif ($ARGV[0] =~ m/.+\=.*\:.*$/) {
- print STDERR "Warning: suspicious first argument to queue.pl: $ARGV[0]\n";
- }
-}
-
-if (@ARGV < 2) {
- print_usage();
-}
-
-if (exists $cli_options{"config"}) {
- $config = $cli_options{"config"};
-}
-
-my $default_config_file = <<'EOF';
-# Default configuration
-command qsub -v PATH -cwd -S /bin/bash -j y -l arch=*64*
-option mem=* -l mem_free=$0,ram_free=$0
-option mem=0 # Do not add anything to qsub_opts
-option num_threads=* -pe smp $0
-option num_threads=1 # Do not add anything to qsub_opts
-option max_jobs_run=* -tc $0
-default gpu=0
-option gpu=0
-option gpu=* -l gpu=$0 -q g.q
-EOF
-
-# Here the configuration options specified by the user on the command line
-# (e.g. --mem 2G) are converted to options to the qsub system as defined in
-# the config file. (e.g. if the config file has the line
-# "option mem=* -l ram_free=$0,mem_free=$0"
-# and the user has specified '--mem 2G' on the command line, the options
-# passed to queue system would be "-l ram_free=2G,mem_free=2G
-# A more detailed description of the ways the options would be handled is at
-# the top of this file.
-
-my $opened_config_file = 1;
-
-open CONFIG, "<$config" or $opened_config_file = 0;
-
-my %cli_config_options = ();
-my %cli_default_options = ();
-
-if ($opened_config_file == 0 && exists($cli_options{"config"})) {
- print STDERR "Could not open config file $config\n";
- exit(1);
-} elsif ($opened_config_file == 0 && !exists($cli_options{"config"})) {
- # Open the default config file instead
- open (CONFIG, "echo '$default_config_file' |") or die "Unable to open pipe\n";
- $config = "Default config";
-}
-
-my $qsub_cmd = "";
-my $read_command = 0;
-
-while(<CONFIG>) {
- chomp;
- my $line = $_;
- $_ =~ s/\s*#.*//g;
- if ($_ eq "") { next; }
- if ($_ =~ /^command (.+)/) {
- $read_command = 1;
- $qsub_cmd = $1 . " ";
- } elsif ($_ =~ m/^option ([^=]+)=\* (.+)$/) {
- # Config option that needs replacement with parameter value read from CLI
- # e.g.: option mem=* -l mem_free=$0,ram_free=$0
- my $option = $1; # mem
- my $arg= $2; # -l mem_free=$0,ram_free=$0
- if ($arg !~ m:\$0:) {
- die "Unable to parse line '$line' in config file ($config)\n";
- }
- if (exists $cli_options{$option}) {
- # Replace $0 with the argument read from command line.
- # e.g. "-l mem_free=$0,ram_free=$0" -> "-l mem_free=2G,ram_free=2G"
- $arg =~ s/\$0/$cli_options{$option}/g;
- $cli_config_options{$option} = $arg;
- }
- } elsif ($_ =~ m/^option ([^=]+)=(\S+)\s?(.*)$/) {
- # Config option that does not need replacement
- # e.g. option gpu=0 -q all.q
- my $option = $1; # gpu
- my $value = $2; # 0
- my $arg = $3; # -q all.q
- if (exists $cli_options{$option}) {
- $cli_default_options{($option,$value)} = $arg;
- }
- } elsif ($_ =~ m/^default (\S+)=(\S+)/) {
- # Default options. Used for setting default values to options i.e. when
- # the user does not specify the option on the command line
- # e.g. default gpu=0
- my $option = $1; # gpu
- my $value = $2; # 0
- if (!exists $cli_options{$option}) {
- # If the user has specified this option on the command line, then we
- # don't have to do anything
- $cli_options{$option} = $value;
- }
- } else {
- print STDERR "queue.pl: unable to parse line '$line' in config file ($config)\n";
- exit(1);
- }
-}
-
-close(CONFIG);
-
-if ($read_command != 1) {
- print STDERR "queue.pl: config file ($config) does not contain the line \"command .*\"\n";
- exit(1);
-}
-
-for my $option (keys %cli_options) {
- if ($option eq "config") { next; }
- if ($option eq "max_jobs_run" && $array_job != 1) { next; }
- my $value = $cli_options{$option};
-
- if (exists $cli_default_options{($option,$value)}) {
- $qsub_opts .= "$cli_default_options{($option,$value)} ";
- } elsif (exists $cli_config_options{$option}) {
- $qsub_opts .= "$cli_config_options{$option} ";
- } else {
- if ($opened_config_file == 0) { $config = "default config file"; }
- die "queue.pl: Command line option $option not described in $config (or value '$value' not allowed)\n";
- }
-}
-
-my $cwd = getcwd();
-my $logfile = shift @ARGV;
-
-if ($array_job == 1 && $logfile !~ m/$jobname/
- && $jobend > $jobstart) {
- print STDERR "queue.pl: you are trying to run a parallel job but "
- . "you are putting the output into just one log file ($logfile)\n";
- exit(1);
-}
-
-#
-# Work out the command; quote escaping is done here.
-# Note: the rules for escaping stuff are worked out pretty
-# arbitrarily, based on what we want it to do. Some things that
-# we pass as arguments to queue.pl, such as "|", we want to be
-# interpreted by bash, so we don't escape them. Other things,
-# such as archive specifiers like 'ark:gunzip -c foo.gz|', we want
-# to be passed, in quotes, to the Kaldi program. Our heuristic
-# is that stuff with spaces in should be quoted. This doesn't
-# always work.
-#
-my $cmd = "";
-
-foreach my $x (@ARGV) {
- if ($x =~ m/^\S+$/) { $cmd .= $x . " "; } # If string contains no spaces, take
- # as-is.
- elsif ($x =~ m:\":) { $cmd .= "'$x' "; } # else if no dbl-quotes, use single
- else { $cmd .= "\"$x\" "; } # else use double.
-}
-
-#
-# Work out the location of the script file, and open it for writing.
-#
-my $dir = dirname($logfile);
-my $base = basename($logfile);
-my $qdir = "$dir/q";
-$qdir =~ s:/(log|LOG)/*q:/q:; # If qdir ends in .../log/q, make it just .../q.
-my $queue_logfile = "$qdir/$base";
-
-if (!-d $dir) { system "mkdir -p $dir 2>/dev/null"; } # another job may be doing this...
-if (!-d $dir) { die "Cannot make the directory $dir\n"; }
-# make a directory called "q",
-# where we will put the log created by qsub... normally this doesn't contain
-# anything interesting, evertyhing goes to $logfile.
-if (! -d "$qdir") {
- system "mkdir $qdir 2>/dev/null";
- sleep(5); ## This is to fix an issue we encountered in denominator lattice creation,
- ## where if e.g. the exp/tri2b_denlats/log/15/q directory had just been
- ## created and the job immediately ran, it would die with an error because nfs
- ## had not yet synced. I'm also decreasing the acdirmin and acdirmax in our
- ## NFS settings to something like 5 seconds.
-}
-
-my $queue_array_opt = "";
-if ($array_job == 1) { # It's an array job.
- $queue_array_opt = "-t $jobstart:$jobend";
- $logfile =~ s/$jobname/\$SGE_TASK_ID/g; # This variable will get
- # replaced by qsub, in each job, with the job-id.
- $cmd =~ s/$jobname/\$\{SGE_TASK_ID\}/g; # same for the command...
- $queue_logfile =~ s/\.?$jobname//; # the log file in the q/ subdirectory
- # is for the queue to put its log, and this doesn't need the task array subscript
- # so we remove it.
-}
-
-# queue_scriptfile is as $queue_logfile [e.g. dir/q/foo.log] but
-# with the suffix .sh.
-my $queue_scriptfile = $queue_logfile;
-($queue_scriptfile =~ s/\.[a-zA-Z]{1,5}$/.sh/) || ($queue_scriptfile .= ".sh");
-if ($queue_scriptfile !~ m:^/:) {
- $queue_scriptfile = $cwd . "/" . $queue_scriptfile; # just in case.
-}
-
-# We'll write to the standard input of "qsub" (the file-handle Q),
-# the job that we want it to execute.
-# Also keep our current PATH around, just in case there was something
-# in it that we need (although we also source ./path.sh)
-
-my $syncfile = "$qdir/done.$$";
-
-system("rm $queue_logfile $syncfile 2>/dev/null");
-#
-# Write to the script file, and then close it.
-#
-open(Q, ">$queue_scriptfile") || die "Failed to write to $queue_scriptfile";
-
-print Q "#!/bin/bash\n";
-print Q "cd $cwd\n";
-print Q ". ./path.sh\n";
-print Q "( echo '#' Running on \`hostname\`\n";
-print Q " echo '#' Started at \`date\`\n";
-print Q " echo -n '# '; cat <<EOF\n";
-print Q "$cmd\n"; # this is a way of echoing the command into a comment in the log file,
-print Q "EOF\n"; # without having to escape things like "|" and quote characters.
-print Q ") >$logfile\n";
-print Q "time1=\`date +\"%s\"\`\n";
-print Q " ( $cmd ) 2>>$logfile >>$logfile\n";
-print Q "ret=\$?\n";
-print Q "time2=\`date +\"%s\"\`\n";
-print Q "echo '#' Accounting: time=\$((\$time2-\$time1)) threads=$num_threads >>$logfile\n";
-print Q "echo '#' Finished at \`date\` with status \$ret >>$logfile\n";
-print Q "[ \$ret -eq 137 ] && exit 100;\n"; # If process was killed (e.g. oom) it will exit with status 137;
- # let the script return with status 100 which will put it to E state; more easily rerunnable.
-if ($array_job == 0) { # not an array job
- print Q "touch $syncfile\n"; # so we know it's done.
-} else {
- print Q "touch $syncfile.\$SGE_TASK_ID\n"; # touch a bunch of sync-files.
-}
-print Q "exit \$[\$ret ? 1 : 0]\n"; # avoid status 100 which grid-engine
-print Q "## submitted with:\n"; # treats specially.
-$qsub_cmd .= "-o $queue_logfile $qsub_opts $queue_array_opt $queue_scriptfile >>$queue_logfile 2>&1";
-print Q "# $qsub_cmd\n";
-if (!close(Q)) { # close was not successful... || die "Could not close script file $shfile";
- die "Failed to close the script file (full disk?)";
-}
-
-my $ret = system ($qsub_cmd);
-if ($ret != 0) {
- if ($sync && $ret == 256) { # this is the exit status when a job failed (bad exit status)
- if (defined $jobname) { $logfile =~ s/\$SGE_TASK_ID/*/g; }
- print STDERR "queue.pl: job writing to $logfile failed\n";
- } else {
- print STDERR "queue.pl: error submitting jobs to queue (return status was $ret)\n";
- print STDERR "queue log file is $queue_logfile, command was $qsub_cmd\n";
- print STDERR `tail $queue_logfile`;
- }
- exit(1);
-}
-
-my $sge_job_id;
-if (! $sync) { # We're not submitting with -sync y, so we
- # need to wait for the jobs to finish. We wait for the
- # sync-files we "touched" in the script to exist.
- my @syncfiles = ();
- if (!defined $jobname) { # not an array job.
- push @syncfiles, $syncfile;
- } else {
- for (my $jobid = $jobstart; $jobid <= $jobend; $jobid++) {
- push @syncfiles, "$syncfile.$jobid";
- }
- }
- # We will need the sge_job_id, to check that job still exists
- { # Get the SGE job-id from the log file in q/
- open(L, "<$queue_logfile") || die "Error opening log file $queue_logfile";
- undef $sge_job_id;
- while (<L>) {
- if (m/Your job\S* (\d+)[. ].+ has been submitted/) {
- if (defined $sge_job_id) {
- die "Error: your job was submitted more than once (see $queue_logfile)";
- } else {
- $sge_job_id = $1;
- }
- }
- }
- close(L);
- if (!defined $sge_job_id) {
- die "Error: log file $queue_logfile does not specify the SGE job-id.";
- }
- }
- my $check_sge_job_ctr=1;
- #
- my $wait = 0.1;
- my $counter = 0;
- foreach my $f (@syncfiles) {
- # wait for them to finish one by one.
- while (! -f $f) {
- sleep($wait);
- $wait *= 1.2;
- if ($wait > 3.0) {
- $wait = 3.0; # never wait more than 3 seconds.
- # the following (.kick) commands are basically workarounds for NFS bugs.
- if (rand() < 0.25) { # don't do this every time...
- if (rand() > 0.5) {
- system("touch $qdir/.kick");
- } else {
- system("rm $qdir/.kick 2>/dev/null");
- }
- }
- if ($counter++ % 10 == 0) {
- # This seems to kick NFS in the teeth to cause it to refresh the
- # directory. I've seen cases where it would indefinitely fail to get
- # updated, even though the file exists on the server.
- # Only do this every 10 waits (every 30 seconds) though, or if there
- # are many jobs waiting they can overwhelm the file server.
- system("ls $qdir >/dev/null");
- }
- }
-
- # Check that the job exists in SGE. Job can be killed if duration
- # exceeds some hard limit, or in case of a machine shutdown.
- if (($check_sge_job_ctr++ % 10) == 0) { # Don't run qstat too often, avoid stress on SGE.
- if ( -f $f ) { next; }; #syncfile appeared: OK.
- $ret = system("qstat -j $sge_job_id >/dev/null 2>/dev/null");
- # system(...) : To get the actual exit value, shift $ret right by eight bits.
- if ($ret>>8 == 1) { # Job does not seem to exist
- # Don't consider immediately missing job as error, first wait some
- # time to make sure it is not just delayed creation of the syncfile.
-
- sleep(3);
- # Sometimes NFS gets confused and thinks it's transmitted the directory
- # but it hasn't, due to timestamp issues. Changing something in the
- # directory will usually fix that.
- system("touch $qdir/.kick");
- system("rm $qdir/.kick 2>/dev/null");
- if ( -f $f ) { next; } #syncfile appeared, ok
- sleep(7);
- system("touch $qdir/.kick");
- sleep(1);
- system("rm $qdir/.kick 2>/dev/null");
- if ( -f $f ) { next; } #syncfile appeared, ok
- sleep(60);
- system("touch $qdir/.kick");
- sleep(1);
- system("rm $qdir/.kick 2>/dev/null");
- if ( -f $f ) { next; } #syncfile appeared, ok
- $f =~ m/\.(\d+)$/ || die "Bad sync-file name $f";
- my $job_id = $1;
- if (defined $jobname) {
- $logfile =~ s/\$SGE_TASK_ID/$job_id/g;
- }
- my $last_line = `tail -n 1 $logfile`;
- if ($last_line =~ m/status 0$/ && (-M $logfile) < 0) {
- # if the last line of $logfile ended with "status 0" and
- # $logfile is newer than this program [(-M $logfile) gives the
- # time elapsed between file modification and the start of this
- # program], then we assume the program really finished OK,
- # and maybe something is up with the file system.
- print STDERR "**queue.pl: syncfile $f was not created but job seems\n" .
- "**to have finished OK. Probably your file-system has problems.\n" .
- "**This is just a warning.\n";
- last;
- } else {
- chop $last_line;
- print STDERR "queue.pl: Error, unfinished job no " .
- "longer exists, log is in $logfile, last line is '$last_line', " .
- "syncfile is $f, return status of qstat was $ret\n" .
- "Possible reasons: a) Exceeded time limit? -> Use more jobs!" .
- " b) Shutdown/Frozen machine? -> Run again!\n";
- exit(1);
- }
- } elsif ($ret != 0) {
- print STDERR "queue.pl: Warning: qstat command returned status $ret (qstat -j $sge_job_id,$!)\n";
- }
- }
- }
- }
- my $all_syncfiles = join(" ", @syncfiles);
- system("rm $all_syncfiles 2>/dev/null");
-}
-
-# OK, at this point we are synced; we know the job is done.
-# But we don't know about its exit status. We'll look at $logfile for this.
-# First work out an array @logfiles of file-locations we need to
-# read (just one, unless it's an array job).
-my @logfiles = ();
-if (!defined $jobname) { # not an array job.
- push @logfiles, $logfile;
-} else {
- for (my $jobid = $jobstart; $jobid <= $jobend; $jobid++) {
- my $l = $logfile;
- $l =~ s/\$SGE_TASK_ID/$jobid/g;
- push @logfiles, $l;
- }
-}
-
-my $num_failed = 0;
-my $status = 1;
-foreach my $l (@logfiles) {
- my @wait_times = (0.1, 0.2, 0.2, 0.3, 0.5, 0.5, 1.0, 2.0, 5.0, 5.0, 5.0, 10.0, 25.0);
- for (my $iter = 0; $iter <= @wait_times; $iter++) {
- my $line = `tail -10 $l 2>/dev/null`; # Note: although this line should be the last
- # line of the file, I've seen cases where it was not quite the last line because
- # of delayed output by the process that was running, or processes it had called.
- # so tail -10 gives it a little leeway.
- if ($line =~ m/with status (\d+)/) {
- $status = $1;
- last;
- } else {
- if ($iter < @wait_times) {
- sleep($wait_times[$iter]);
- } else {
- if (! -f $l) {
- print STDERR "Log-file $l does not exist.\n";
- } else {
- print STDERR "The last line of log-file $l does not seem to indicate the "
- . "return status as expected\n";
- }
- exit(1); # Something went wrong with the queue, or the
- # machine it was running on, probably.
- }
- }
- }
- # OK, now we have $status, which is the return-status of
- # the command in the job.
- if ($status != 0) { $num_failed++; }
-}
-if ($num_failed == 0) { exit(0); }
-else { # we failed.
- if (@logfiles == 1) {
- if (defined $jobname) { $logfile =~ s/\$SGE_TASK_ID/$jobstart/g; }
- print STDERR "queue.pl: job failed with status $status, log is in $logfile\n";
- if ($logfile =~ m/JOB/) {
- print STDERR "queue.pl: probably you forgot to put JOB=1:\$nj in your script.\n";
- }
- } else {
- if (defined $jobname) { $logfile =~ s/\$SGE_TASK_ID/*/g; }
- my $numjobs = 1 + $jobend - $jobstart;
- print STDERR "queue.pl: $num_failed / $numjobs failed, log is in $logfile\n";
- }
- exit(1);
-}
diff --git a/kaldi_decode/utils/run.pl b/kaldi_decode/utils/run.pl
deleted file mode 100755
index 6145a7a..0000000
--- a/kaldi_decode/utils/run.pl
+++ /dev/null
@@ -1,264 +0,0 @@
-#!/usr/bin/env perl
-use warnings; #sed replacement for -w perl parameter
-
-# In general, doing
-# run.pl some.log a b c is like running the command a b c in
-# the bash shell, and putting the standard error and output into some.log.
-# To run parallel jobs (backgrounded on the host machine), you can do (e.g.)
-# run.pl JOB=1:4 some.JOB.log a b c JOB is like running the command a b c JOB
-# and putting it in some.JOB.log, for each one. [Note: JOB can be any identifier].
-# If any of the jobs fails, this script will fail.
-
-# A typical example is:
-# run.pl some.log my-prog "--opt=foo bar" foo \| other-prog baz
-# and run.pl will run something like:
-# ( my-prog '--opt=foo bar' foo | other-prog baz ) >& some.log
-#
-# Basically it takes the command-line arguments, quotes them
-# as necessary to preserve spaces, and evaluates them with bash.
-# In addition it puts the command line at the top of the log, and
-# the start and end times of the command at the beginning and end.
-# The reason why this is useful is so that we can create a different
-# version of this program that uses a queueing system instead.
-
-# use Data::Dumper;
-
-@ARGV < 2 && die "usage: run.pl log-file command-line arguments...";
-
-
-$max_jobs_run = -1;
-$jobstart = 1;
-$jobend = 1;
-$ignored_opts = ""; # These will be ignored.
-
-# First parse an option like JOB=1:4, and any
-# options that would normally be given to
-# queue.pl, which we will just discard.
-
-if (@ARGV > 0) {
- while (@ARGV >= 2 && $ARGV[0] =~ m:^-:) { # parse any options
- # that would normally go to qsub, but which will be ignored here.
- $switch = shift @ARGV;
- if ($switch eq "-V") {
- $ignored_opts .= "-V ";
- } elsif ($switch eq "--max-jobs-run" || $switch eq "-tc") {
- # we do support the option --max-jobs-run n, and its GridEngine form -tc n.
- $max_jobs_run = shift @ARGV;
- if (! ($max_jobs_run > 0)) {
- die "run.pl: invalid option --max-jobs-run $max_jobs_run";
- }
- } else {
- $option = shift @ARGV;
- if ($switch eq "-sync" && $option =~ m/^[yY]/) {
- $ignored_opts .= "-sync "; # Note: in the
- # corresponding code in queue.pl it says instead, just "$sync = 1;".
- }
- $ignored_opts .= "$switch $option ";
- if ($switch eq "-pe") { # e.g. -pe smp 5
- $option2 = shift @ARGV;
- $ignored_opts .= "$option2 ";
- }
- }
- }
- if ($ARGV[0] =~ m/^([\w_][\w\d_]*)+=(\d+):(\d+)$/) { # e.g. JOB=1:10
- $jobname = $1;
- $jobstart = $2;
- $jobend = $3;
- shift;
- if ($jobstart > $jobend) {
- die "run.pl: invalid job range $ARGV[0]";
- }
- if ($jobstart <= 0) {
- die "run.pl: invalid job range $ARGV[0], start must be strictly positive (this is required for GridEngine compatibility).";
- }
- } elsif ($ARGV[0] =~ m/^([\w_][\w\d_]*)+=(\d+)$/) { # e.g. JOB=1.
- $jobname = $1;
- $jobstart = $2;
- $jobend = $2;
- shift;
- } elsif ($ARGV[0] =~ m/.+\=.*\:.*$/) {
- print STDERR "run.pl: Warning: suspicious first argument to run.pl: $ARGV[0]\n";
- }
-}
-
-# Users found this message confusing so we are removing it.
-# if ($ignored_opts ne "") {
-# print STDERR "run.pl: Warning: ignoring options \"$ignored_opts\"\n";
-# }
-
-if ($max_jobs_run == -1) { # If --max-jobs-run option not set,
- # then work out the number of processors if possible,
- # and set it based on that.
- $max_jobs_run = 0;
- if (open(P, "</proc/cpuinfo")) { # Linux
- while (<P>) { if (m/^processor/) { $max_jobs_run++; } }
- if ($max_jobs_run == 0) {
- print STDERR "run.pl: Warning: failed to detect any processors from /proc/cpuinfo\n";
- $max_jobs_run = 10; # reasonable default.
- }
- close(P);
- } elsif (open(P, "sysctl -a |")) { # BSD/Darwin
- while (<P>) {
- if (m/hw\.ncpu\s*[:=]\s*(\d+)/) { # hw.ncpu = 4, or hw.ncpu: 4
- $max_jobs_run = $1;
- last;
- }
- }
- close(P);
- if ($max_jobs_run == 0) {
- print STDERR "run.pl: Warning: failed to detect any processors from sysctl -a\n";
- $max_jobs_run = 10; # reasonable default.
- }
- } else {
- # allow at most 32 jobs at once, on non-UNIX systems; change this code
- # if you need to change this default.
- $max_jobs_run = 32;
- }
- # The just-computed value of $max_jobs_run is just the number of processors
- # (or our best guess); and if it happens that the number of jobs we need to
- # run is just slightly above $max_jobs_run, it will make sense to increase
- # $max_jobs_run to equal the number of jobs, so we don't have a small number
- # of leftover jobs.
- $num_jobs = $jobend - $jobstart + 1;
- if ($num_jobs > $max_jobs_run && $num_jobs < 1.4 * $max_jobs_run) {
- $max_jobs_run = $num_jobs;
- }
-}
-
-$logfile = shift @ARGV;
-
-if (defined $jobname && $logfile !~ m/$jobname/ &&
- $jobend > $jobstart) {
- print STDERR "run.pl: you are trying to run a parallel job but "
- . "you are putting the output into just one log file ($logfile)\n";
- exit(1);
-}
-
-$cmd = "";
-
-foreach $x (@ARGV) {
- if ($x =~ m/^\S+$/) { $cmd .= $x . " "; }
- elsif ($x =~ m:\":) { $cmd .= "'$x' "; }
- else { $cmd .= "\"$x\" "; }
-}
-
-#$Data::Dumper::Indent=0;
-$ret = 0;
-$numfail = 0;
-%active_pids=();
-
-use POSIX ":sys_wait_h";
-for ($jobid = $jobstart; $jobid <= $jobend; $jobid++) {
- if (scalar(keys %active_pids) >= $max_jobs_run) {
-
- # Lets wait for a change in any child's status
- # Then we have to work out which child finished
- $r = waitpid(-1, 0);
- $code = $?;
- if ($r < 0 ) { die "run.pl: Error waiting for child process"; } # should never happen.
- if ( defined $active_pids{$r} ) {
- $jid=$active_pids{$r};
- $fail[$jid]=$code;
- if ($code !=0) { $numfail++;}
- delete $active_pids{$r};
- # print STDERR "Finished: $r/$jid " . Dumper(\%active_pids) . "\n";
- } else {
- die "run.pl: Cannot find the PID of the chold process that just finished.";
- }
-
- # In theory we could do a non-blocking waitpid over all jobs running just
- # to find out if only one or more jobs finished during the previous waitpid()
- # However, we just omit this and will reap the next one in the next pass
- # through the for(;;) cycle
- }
- $childpid = fork();
- if (!defined $childpid) { die "run.pl: Error forking in run.pl (writing to $logfile)"; }
- if ($childpid == 0) { # We're in the child... this branch
- # executes the job and returns (possibly with an error status).
- if (defined $jobname) {
- $cmd =~ s/$jobname/$jobid/g;
- $logfile =~ s/$jobname/$jobid/g;
- }
- system("mkdir -p `dirname $logfile` 2>/dev/null");
- open(F, ">$logfile") || die "run.pl: Error opening log file $logfile";
- print F "# " . $cmd . "\n";
- print F "# Started at " . `date`;
- $starttime = `date +'%s'`;
- print F "#\n";
- close(F);
-
- # Pipe into bash.. make sure we're not using any other shell.
- open(B, "|bash") || die "run.pl: Error opening shell command";
- print B "( " . $cmd . ") 2>>$logfile >> $logfile";
- close(B); # If there was an error, exit status is in $?
- $ret = $?;
-
- $lowbits = $ret & 127;
- $highbits = $ret >> 8;
- if ($lowbits != 0) { $return_str = "code $highbits; signal $lowbits" }
- else { $return_str = "code $highbits"; }
-
- $endtime = `date +'%s'`;
- open(F, ">>$logfile") || die "run.pl: Error opening log file $logfile (again)";
- $enddate = `date`;
- chop $enddate;
- print F "# Accounting: time=" . ($endtime - $starttime) . " threads=1\n";
- print F "# Ended ($return_str) at " . $enddate . ", elapsed time " . ($endtime-$starttime) . " seconds\n";
- close(F);
- exit($ret == 0 ? 0 : 1);
- } else {
- $pid[$jobid] = $childpid;
- $active_pids{$childpid} = $jobid;
- # print STDERR "Queued: " . Dumper(\%active_pids) . "\n";
- }
-}
-
-# Now we have submitted all the jobs, lets wait until all the jobs finish
-foreach $child (keys %active_pids) {
- $jobid=$active_pids{$child};
- $r = waitpid($pid[$jobid], 0);
- $code = $?;
- if ($r == -1) { die "run.pl: Error waiting for child process"; } # should never happen.
- if ($r != 0) { $fail[$jobid]=$code; $numfail++ if $code!=0; } # Completed successfully
-}
-
-# Some sanity checks:
-# The $fail array should not contain undefined codes
-# The number of non-zeros in that array should be equal to $numfail
-# We cannot do foreach() here, as the JOB ids do not necessarily start by zero
-$failed_jids=0;
-for ($jobid = $jobstart; $jobid <= $jobend; $jobid++) {
- $job_return = $fail[$jobid];
- if (not defined $job_return ) {
- # print Dumper(\@fail);
-
- die "run.pl: Sanity check failed: we have indication that some jobs are running " .
- "even after we waited for all jobs to finish" ;
- }
- if ($job_return != 0 ){ $failed_jids++;}
-}
-if ($failed_jids != $numfail) {
- die "run.pl: Sanity check failed: cannot find out how many jobs failed ($failed_jids x $numfail)."
-}
-if ($numfail > 0) { $ret = 1; }
-
-if ($ret != 0) {
- $njobs = $jobend - $jobstart + 1;
- if ($njobs == 1) {
- if (defined $jobname) {
- $logfile =~ s/$jobname/$jobstart/; # only one numbered job, so replace name with
- # that job.
- }
- print STDERR "run.pl: job failed, log is in $logfile\n";
- if ($logfile =~ m/JOB/) {
- print STDERR "run.pl: probably you forgot to put JOB=1:\$nj in your script.";
- }
- }
- else {
- $logfile =~ s/$jobname/*/g;
- print STDERR "run.pl: $numfail / $njobs failed, log is in $logfile\n";
- }
-}
-
-
-exit ($ret);
diff --git a/kaldi_decode/utils/split_data.sh b/kaldi_decode/utils/split_data.sh
deleted file mode 100755
index 941890c..0000000
--- a/kaldi_decode/utils/split_data.sh
+++ /dev/null
@@ -1,135 +0,0 @@
-#!/bin/bash
-# Copyright 2010-2013 Microsoft Corporation
-# Johns Hopkins University (Author: Daniel Povey)
-
-# Licensed under the Apache License, Version 2.0 (the "License");
-# you may not use this file except in compliance with the License.
-# You may obtain a copy of the License at
-#
-# http://www.apache.org/licenses/LICENSE-2.0
-#
-# THIS CODE IS PROVIDED *AS IS* BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
-# KIND, EITHER EXPRESS OR IMPLIED, INCLUDING WITHOUT LIMITATION ANY IMPLIED
-# WARRANTIES OR CONDITIONS OF TITLE, FITNESS FOR A PARTICULAR PURPOSE,
-# MERCHANTABLITY OR NON-INFRINGEMENT.
-# See the Apache 2 License for the specific language governing permissions and
-# limitations under the License.
-
-split_per_spk=true
-if [ "$1" == "--per-utt" ]; then
- split_per_spk=false
- shift
-fi
-
-if [ $# != 2 ]; then
- echo "Usage: split_data.sh [--per-utt] <data-dir> <num-to-split>"
- echo "This script will not split the data-dir if it detects that the output is newer than the input."
- echo "By default it splits per speaker (so each speaker is in only one split dir),"
- echo "but with the --per-utt option it will ignore the speaker information while splitting."
- exit 1
-fi
-
-data=$1
-numsplit=$2
-
-if [ $numsplit -le 0 ]; then
- echo "Invalid num-split argument $numsplit";
- exit 1;
-fi
-
-n=0;
-feats=""
-wavs=""
-utt2spks=""
-texts=""
-
-nu=`cat $data/utt2spk | wc -l`
-nf=`cat $data/feats.scp 2>/dev/null | wc -l`
-nt=`cat $data/text 2>/dev/null | wc -l` # take it as zero if no such file
-if [ -f $data/feats.scp ] && [ $nu -ne $nf ]; then
- echo "** split_data.sh: warning, #lines is (utt2spk,feats.scp) is ($nu,$nf); you can "
- echo "** use utils/fix_data_dir.sh $data to fix this."
-fi
-if [ -f $data/text ] && [ $nu -ne $nt ]; then
- echo "** split_data.sh: warning, #lines is (utt2spk,text) is ($nu,$nt); you can "
- echo "** use utils/fix_data_dir.sh to fix this."
-fi
-
-s1=$data/split$numsplit/1
-if [ ! -d $s1 ]; then
- need_to_split=true
-else
- need_to_split=false
- for f in utt2spk spk2utt spk2warp feats.scp text wav.scp cmvn.scp spk2gender \
- vad.scp segments reco2file_and_channel utt2lang; do
- if [[ -f $data/$f && ( ! -f $s1/$f || $s1/$f -ot $data/$f ) ]]; then
- need_to_split=true
- fi
- done
-fi
-
-if ! $need_to_split; then
- exit 0;
-fi
-
-for n in `seq $numsplit`; do
- mkdir -p $data/split$numsplit/$n
- utt2spks="$utt2spks $data/split$numsplit/$n/utt2spk"
-done
-
-if $split_per_spk; then
- utt2spk_opt="--utt2spk=$data/utt2spk"
-else
- utt2spk_opt=
-fi
-
-# If lockfile is not installed, just don't lock it. It's not a big deal.
-which lockfile >&/dev/null && lockfile -l 60 $data/.split_lock
-
-utils/split_scp.pl $utt2spk_opt $data/utt2spk $utt2spks || exit 1
-
-for n in `seq $numsplit`; do
- dsn=$data/split$numsplit/$n
- utils/utt2spk_to_spk2utt.pl $dsn/utt2spk > $dsn/spk2utt || exit 1;
-done
-
-maybe_wav_scp=
-if [ ! -f $data/segments ]; then
- maybe_wav_scp=wav.scp # If there is no segments file, then wav file is
- # indexed per utt.
-fi
-
-# split some things that are indexed by utterance.
-for f in feats.scp text vad.scp utt2lang $maybe_wav_scp; do
- if [ -f $data/$f ]; then
- utils/filter_scps.pl JOB=1:$numsplit \
- $data/split$numsplit/JOB/utt2spk $data/$f $data/split$numsplit/JOB/$f || exit 1;
- fi
-done
-
-# split some things that are indexed by speaker
-for f in spk2gender spk2warp cmvn.scp; do
- if [ -f $data/$f ]; then
- utils/filter_scps.pl JOB=1:$numsplit \
- $data/split$numsplit/JOB/spk2utt $data/$f $data/split$numsplit/JOB/$f || exit 1;
- fi
-done
-
-for n in `seq $numsplit`; do
- dsn=$data/split$numsplit/$n
- if [ -f $data/segments ]; then
- utils/filter_scp.pl $dsn/utt2spk $data/segments > $dsn/segments
- awk '{print $2;}' $dsn/segments | sort | uniq > $data/tmp.reco # recording-ids.
- if [ -f $data/reco2file_and_channel ]; then
- utils/filter_scp.pl $data/tmp.reco $data/reco2file_and_channel > $dsn/reco2file_and_channel
- fi
- if [ -f $data/wav.scp ]; then
- utils/filter_scp.pl $data/tmp.reco $data/wav.scp >$dsn/wav.scp
- fi
- rm $data/tmp.reco
- fi # else it would have been handled above, see maybe_wav.
-done
-
-rm -f $data/.split_lock
-
-exit 0