From e85a4af65640aef77378275d478c1ba8b06b785e Mon Sep 17 00:00:00 2001
From: Qi Liu <liuq901@163.com>
Date: Wed, 11 May 2016 16:53:56 +0800
Subject: seq buffer support shuffle

---
 nerv/io/seq_buffer.lua | 91 +++++++++++++++++++++++++++++++++++++++++---------
 nerv/nn/trainer.lua    |  3 ++
 2 files changed, 79 insertions(+), 15 deletions(-)

diff --git a/nerv/io/seq_buffer.lua b/nerv/io/seq_buffer.lua
index 8cde1b3..b1c2a75 100644
--- a/nerv/io/seq_buffer.lua
+++ b/nerv/io/seq_buffer.lua
@@ -28,6 +28,8 @@ local SeqBuffer = nerv.class('nerv.SeqBuffer', 'nerv.DataBuffer')
 -- * `batch_size`: the number of rows for each batch matrix
 -- * `chunk_size`: the length of the BPTT context (number of batch
 --   matrices to provide upon each invocation of `get_data()`)
+-- * `buffer_size`: the number of frames to be buffered and shuffled at once (shuffle
+--   in the sequence level, not in the frame level)
 -- * `nn_act_default`: the default value to fill into the "holes" (non-data
 --   frames)
 
@@ -36,6 +38,8 @@ function SeqBuffer:__init(global_conf, buffer_conf)
 
     self.batch_size = buffer_conf.batch_size
     self.chunk_size = buffer_conf.chunk_size
+    self.buffer_size = buffer_conf.buffer_size
+    self.randomize = buffer_conf.randomize
     self.readers = {}
     for _, v in ipairs(buffer_conf.readers) do
         table.insert(self.readers, v.reader)
@@ -49,6 +53,11 @@ function SeqBuffer:__init(global_conf, buffer_conf)
     self.queue = {}
     self.head = 1
     self.tail = 0
+    self.offset = 1
+    self.buffer = {}
+    self.length = {}
+    self.index = {}
+    self.complete = false
 end
 
 function SeqBuffer:new_mini_batch()
@@ -62,25 +71,77 @@ function SeqBuffer:new_mini_batch()
     return res
 end
 
+local function random_shuffle(a)
+    for i = #a, 2, -1 do
+        local j = math.random(i)
+        a[i], a[j] = a[j], a[i]
+    end
+end
+
+function SeqBuffer:fill_buffer()
+    if self.complete then
+        return false
+    end
+    local t = os.clock()
+    self.buffer = {}
+    self.length = {}
+    local size = 0
+    while size < self.buffer_size do
+        local drow = nil
+        local data = {}
+        for i = 1, #self.readers do
+            local tmp = self.readers[i]:get_data()
+            if tmp == nil then
+                self.complete = true
+                break
+            end
+            for id, d in pairs(tmp) do
+                if drow == nil then
+                    drow = d:nrow()
+                elseif d:nrow() ~= drow then
+                    nerv.error('readers provides with inconsistent rows of data')
+                end
+                data[id] = d
+            end
+        end
+        if self.complete then
+            break
+        end
+        size = size + drow
+        table.insert(self.buffer, data)
+        table.insert(self.length, drow)
+    end
+    self.index = {}
+    for i = 1, #self.buffer do
+        self.index[i] = i
+    end
+    if self.randomize then
+        random_shuffle(self.index)
+    end
+    self.offset = 1
+    collectgarbage('collect')
+    nerv.info('%.3fs to fill the buffer', os.clock() - t)
+    return #self.buffer > 0
+end
+
+function SeqBuffer:get_buffered_data()
+    if self.offset > #self.buffer then
+        if not self:fill_buffer() then
+            return nil
+        end
+    end
+    local id = self.index[self.offset]
+    self.offset = self.offset + 1
+    return self.buffer[id], self.length[id]
+end
+
 function SeqBuffer:saturate(batch)
     if self.queue[self.head] ~= nil and self.queue[self.head].seq_length[batch] ~= 0 then
         return true
     end
-    local data = {}
-    local drow = nil
-    for i = 1, #self.readers do
-        local tmp = self.readers[i]:get_data()
-        if tmp == nil then
-            return false
-        end
-        for id, d in pairs(tmp) do
-            if drow == nil then
-                drow = d:nrow()
-            elseif d:nrow() ~= drow then
-                nerv.error('readers provides with inconsistent rows of data')
-            end
-            data[id] = d
-        end
+    local data, drow = self:get_buffered_data()
+    if data == nil then
+        return false
     end
     local offset = 0
     local head = self.head
diff --git a/nerv/nn/trainer.lua b/nerv/nn/trainer.lua
index 8357c10..a17b36c 100644
--- a/nerv/nn/trainer.lua
+++ b/nerv/nn/trainer.lua
@@ -77,9 +77,12 @@ function trainer:make_buffer(readers)
         })
     else
         return nerv.SeqBuffer(gconf, {
+            buffer_size = gconf.buffer_size,
             batch_size = gconf.batch_size,
             chunk_size = gconf.chunk_size,
+            randomize = gconf.randomize,
             readers = readers,
+            nn_act_default = gconf.nn_act_default,
         })
     end
 end
-- 
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